Scaffold Ga0068503_10167772

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10167772
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1559
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021787	Metagenome	217	N
F042376	Metagenome / Metatranscriptome	158	N
F080151	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_101677722	F042376	N/A	MRKLINKWFRDELKTPEGAMLRYFYAPVIGFALVLAIVCGFVIGFDEVWRYWRVAALNL*
Ga0068503_101677724	F021787	N/A	MRDMISCEEVFEADPQARAEFDAVCDEWQDEAILAQDEDLVECTGCGEQWFRPEGHAGDTIDWCRKCYKNDPYYC*
Ga0068503_101677726	F080151	N/A	MRDMYYVIDEDGLNRMFDVSHDGLEDAIEVANEIGTDVMRERDGETERVWSFEDAGSDEPWDGFN