Scaffold Ga0068481_1576723

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1576723
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1516
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037416	Metagenome	168	Y
F047115	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_15767232	F047115	N/A	MKKDPLEFRHQYQGIIRNLINNINICSRRWVETGEPGYGVAMKRYIKEVEELKTFIKKEELRLGYYEE*
Ga0068481_15767233	F037416	N/A	KMLDMIAQYPPEYTEAVIAMSFKLILDCYVERLGESDTTEFLQTAIESVRSGNHGLMLNRKDKEKILWN*