Scaffold Ga0068481_1559355

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1559355
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2190
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F010477	Metagenome / Metatranscriptome	303	Y
F010791	Metagenome / Metatranscriptome	299	N
F069325	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_15593552	F004843	N/A	VDIDKLLLRIYIIVIAVTLSLTSGCADTADAEDSTATIPVEQQEVDNTNTTSDETIWAAIVMTWNPVTYTIDKEFSSEVDCWNYYDTGVGESKMLNSYGTQVLDHQGNKPDKEYMKKHRPAHREYPTRCTKISERG*
Ga0068481_15593553	F069325	AGGA	MRENGMSVCSNCYRSQISIKHDVGHWWNNPPDHVYVCSDKCYKELEQHVKNKTWMLHRPAAMFGESKKVTKGLTALTDKQFGVE*
Ga0068481_15593554	F010477	N/A	MIIQLQIRYLVFIPYLIFVGMMGGNILAEAIVIGFVLGMYDFLFDGGGGGRPA*
Ga0068481_15593555	F010791	GAG	MSFEFRAGRKRVVKSVETVEEANELMRSMIVIRNENSLWENIDVKTGHLRAVDELEKLVGTIFDVFDTMSIYMNGKSVRRIWSRGF*