Scaffold Ga0068481_1491202

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1491202
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1215
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F012919	Metagenome	276	Y
F038414	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_14912021	F002874	GAG	MKEKTDLSLNRSLEELESSYWEFLEATEGEDSSEWSKSVQEDISALEGYLMKMEVL*
Ga0068481_14912023	F038414	AGAAG	MTREEQRDNTINEFYKKRTSPKTIQIQDSKTVRSQAEWLHVSTSEEDGEGQGTYDVGRRVMKRERLADKKLRAKQAKVA*
Ga0068481_14912024	F012919	N/A	MEYIMKISRKKLNLEIGKYLKNGGKITKLPDGPDYRFQPYGVRVTPGDPKVDLTVSDTPTTEQQISYVEKNSL*