Scaffold Ga0068481_1284222

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1284222
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1213
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F068933	Metagenome	124	N
F103880	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_12842221	F068933	N/A	KLDLLKQLHRELLMPKALPGMKGTIGRPSDLIPVHAAGQLKGYWKNVKHKPATGFQVSKKNKFKD*
Ga0068481_12842222	F033842	AGGAG	MNILKDLTSPTKLIDKAKLGMKGAAGYAAATVALEAGTQLLERFVLDPHLPAAANVMNTVITNNAPGLGTVDVRDAIVLLPAETQAYQMLSKSNKQTHFINALSSYVTKIVLRRTGLNPKEIADKTEKIITPRTMLPSVM*
Ga0068481_12842223	F103880	GAG	MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAVSVTINGLQNGGSVPTIANALGLVNPLEIDVGGIPQIRVRLADMYAMDMLWLQHNPLTKISAGDNQEWV