Scaffold Ga0068481_1274963

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1274963
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1786
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024807	Metagenome	204	N
F029468	Metagenome / Metatranscriptome	188	Y
F058443	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_12749631	F024807	GAGG	MTKRTIPFNLVYHDRDQQLTLALHDNPVTLTRDEVDGLIFHLDSFLLDMDKERKPKPSAEGADTHAEVHGEMLMAQYDDDPNPYHGDYSED**CLTSFANQKDARMQQGIQRIC
Ga0068481_12749632	F029468	N/A	VK*SEKAMKIRLKEQAEHEFDKDDVEEKQLKMNVAFKDFMEQFIDCEGDVFYSTAMMATNALWQHKSAVENAKATHVGPEWDHDKGVVGKWRYPHLRKGND*
Ga0068481_12749633	F058443	GAG	MRTRGQTVRLKNKATGDEVRLLVVLSDSKQGYLASDSLSKVKEGNWAWYNLNEWSEVK*