Scaffold Ga0068481_1197186

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1197186
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2995
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007055	Metagenome / Metatranscriptome	359	Y
F026028	Metagenome / Metatranscriptome	199	Y
F038419	Metagenome / Metatranscriptome	166	Y
F049705	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_119718611	F007055	GAG	MSIIWIAIVLTWNPVIYTIDKEFSSEVACWNYYDNGVGESEMRSRYGTQVLDHQGNKPGKEYHKKHRPPHREYPTRMYKNNGDWMVWLTCDIKGRNEGL*
Ga0068481_119718613	F026028	AGGA	MRENGMSVCSNCYHRIKHKKAIEVGQLWNNEPFLGVVCSDKCKEEIEKKVADGTWMVMRSFPKTEEDLGLPTALTDKQFGV
Ga0068481_11971862	F038419	GAG	MIITTTTIILVQAIIVTWIMVTAPTPCPQEYLDLGGDVIEYCELIPHGSGRQWSLKE*
Ga0068481_11971863	F049705	GGA	VVFKGVMIVILMLTSCSYDTKVVCDYRWHHKMTMKKLMQRCNYIPYGDAWVKKQGGEYGK