Scaffold Ga0068481_1192695

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1192695
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2369
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020384	Metagenome / Metatranscriptome	224	N
F021552	Metagenome / Metatranscriptome	218	Y
F037762	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_11926951	F037762	N/A	MSNWKNFERRVAAKVGGKRIPITGRKCLDIDHPFLDIECKYRKSLPAWLFKDAWGQANTGSGIPVIAVSEYNSNNIFTITSIDTLVMLLDESIIDRNE*
Ga0068481_11926952	F021552	GGAG	MIRHLIGKSLSTCTKDILDGTIDEGEVLLICTSTRHPFNDPNHFYDMRWFDSTKEAELLQRLYKQGRIHQPRMLSDSYNHGQEEFLFPYDNYRHKVWYSIKDQALTDLEDEQLEEL*
Ga0068481_11926955	F020384	N/A	MHNKKIHSYQRSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAIRHIQIIKRNVPSGDKGDSAMVEAYRLYDRLQRLSQYPTYFVDNTRKNPGRVASDRGRDYTNARPASVRWDVASMMAVPMTGEDRNWWRPPPRPAPVKHYTREELELEYPAFTVSKKRKDDA*