Scaffold Ga0068481_1149389

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1149389
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4009
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F024128	Metagenome	207	Y
F027651	Metagenome / Metatranscriptome	194	Y
F047304	Metagenome / Metatranscriptome	150	Y
F062152	Metagenome / Metatranscriptome	131	Y
F105352	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_114938910	F047304	GAGG	MSEIKIQNWGAVITSNMVTEKELKRLKKEGNFYKDPKTRKAKGSKNARWGQIG*
Ga0068481_11493892	F024128	N/A	MITKKDTKEYLEKTKKVLERGNGSLSDNLKYINDTVSHLEINRFQGVGDIMYQVVAKALTINVVTGKKAFVVWAVQEENDMETAVQKAKDELRNRIVMGSPVLQFAGPEQDVRNLVEYK*
Ga0068481_11493893	F062152	N/A	MGPHYMNELVKYINKLNEKTRARGAVGFLTNDPEHWAGYNVYTIEQLLDYLEREFQHNIKKDERQNY*
Ga0068481_11493894	F027651	N/A	MKIRNNIKSNKDLKVKKVNLNKIVESNIKWEAVGLANSLNQNYHNWLDCVTDTKDYNIESDKFGHGFGVFSGSKYWKIEASKNSGCNYIIDQKNSKMYSTAHKENHVWGYVVKKNTKNHNRGDILTRNFKVVGNVLTGNKVNLGMPNSHYPNYTVCWAHNDIW*
Ga0068481_11493896	F004418	GAG	MKKFINWLKDDWKNNRFRLFCETIGSLCFIAIYVLMAWYGESVSIMNIFLIQLVGSTLHIVNAYLRNSVNLIALNCIVIAIALFGLAKMALSI*
Ga0068481_11493897	F105352	GGAG	MKTYGTVIRRKAQKKMKKYKLEIPRTQFDRIADAFELEDHYVNGYDVDKDTVIFTVSEKQRVWFEKYAVQKVIKWKGKLKQNPYRWICQIFLPHEIEKYLVK*