Scaffold Ga0068481_1147766

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1147766
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5279
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018265	Metagenome / Metatranscriptome	236	Y
F018553	Metagenome / Metatranscriptome	234	Y
F030563	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_114776613	F018265	GAG	MSMERHTLRAVKLTQNIFELNRVNRELAVVRKIVEDLEQRKMELISS*
Ga0068481_114776617	F018553	AGGA	MLCTPRLRIAILNEEIALWEKRCGDEPDYIPYLGYIRDTMKSRVKELEDEDQKMEREK*
Ga0068481_11477663	F030563	GGA	MVCVGLAVKMSYPTTRICSGCLNEFNRVECDIDISDFWNLPEELAWACSTKCANDAKDNWLKPKKMQNNAELT*