Scaffold Ga0068481_1133335

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1133335
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2911
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003611	Metagenome	477	Y
F006484	Metagenome	372	Y
F024326	Metagenome	206	Y
F048569	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_11333352	F048569	GAGG	MSNKYDSLEHIKVLAEIVTLQTVMNETQAKINVLNKQHKKIEELKKGEDEIPF*
Ga0068481_11333355	F006484	GGA	MNNKEITYNTALDIVFMNRCHNCGCTPKNDEWADRAKNLCIDCQNDEE*
Ga0068481_11333356	F003611	GAGG	MKELFYALYFALHFVGAFLGLVIAIHVSTWLGLSMFAFFIIKFLIMMPNVMNQV*
Ga0068481_11333357	F024326	N/A	MKRDNVFNEARASANNKGYMKQFTIEVSHASPAQLQTVAAELKIMSHGWSKFGPRITINKRALEPLKLRLSQAEIKKERATNKRHNYIV*