Scaffold Ga0068481_1129312

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1129312
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2272
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040844	Metagenome / Metatranscriptome	161	N
F074980	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_11293122	F040844	N/A	MYELRNNQFRPEQIELYKQLRSTRANSDILMEYKVTYMYDDEERVAIGDIVDLTRKEIFRLNGAIHMSSERRILKDEIQKEGLEALGWKVTDVDTDV*
Ga0068481_11293125	F074980	N/A	KQLKYLRNLKYTGPAPATSGEASKLIEEILGNKPNSPAPQAAPQDPVIVHEEATEEDLKYSEALLKAADKFHRLAVTSIKKRGEPLRGDIINAERNFLVKVEKLRTCNNS*