Scaffold Ga0068481_1086570

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1086570
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1840
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F060967	Metagenome / Metatranscriptome	132	Y
F064799	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_10865701	F064799	N/A	KLEAEIKYTEIKNNYFETFNQPMSRRAEIAIKPQIIEKSARAQVFQNPQSPYDESNKRLQCVDCGSLFCWYSEQEFESQMREFQRHLVSKHDRAKTEIERDVLIDLKYEGDSR*
Ga0068481_10865705	F005148	GGAG	MKQKKYEEYLRKNLPESDEVECKNCGLKFHDEFNLICLSALDMCLLCANRNLDKETIKEKYHVK*
Ga0068481_10865707	F060967	GGAG	MNKSRVARDLWRKVFNDNLINLSDGDARKGVVRDFLNDPINKKAGWKSKDARFFRLGFQKVAKENNFNV