Scaffold Ga0068482_1440869

Overview

Basic Information

• Taxon OID: 3300006338
• Scaffold ID: Ga0068482_1440869
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1127
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F058216	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068482_14408693	F013700	GAG	MNIDFKNLTYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMADGGMVRQEFLRRIAQIGYDELKFNDIADTLENDVDENNSHLASKYYEPPETNEDDE*
Ga0068482_14408696	F058216	AGGAG	MNKTIGQLIKEDHWSTRRLAVSLNITEADLKGVKWEKSNKPYKKSKKKSYLW*