Scaffold Ga0068482_1354922

Overview

Basic Information

• Taxon OID: 3300006338
• Scaffold ID: Ga0068482_1354922
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2271
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018553	Metagenome / Metatranscriptome	234	Y
F022673	Metagenome	213	Y
F070554	Metagenome / Metatranscriptome	123	Y
F072444	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068482_13549221	F070554	GGA	MSSRNTGGLDPQIVREIEKQTQKQQEIDNRRRKQKLIFWSLIIFGTAIAIGVAVVLSDLAEW*
Ga0068482_13549224	F022673	AGGA	MKREQIISPRVEIAEKIHEELLTSLELERKLLKKELTLQETMSERVVVRKDLVNCERKIKELTEQLQKENDRSKATKWNKQP*
Ga0068482_13549225	F072444	AGAAG	MMPERENNAFWEIAEIIDREMSILRKMRPVGPKEKALLKKMVEDKEKEYEKRTNNQP*
Ga0068482_13549227	F018553	AGG	MLCIPRLRIAILNEEIALWEKRCGDEPDYIPYLGYIRDTMKGRVKELEENERLDQEKNEGIKRK*