Scaffold Ga0068482_1258377

Overview

Basic Information

• Taxon OID: 3300006338
• Scaffold ID: Ga0068482_1258377
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1688
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005400	Metagenome / Metatranscriptome	402	Y
F008155	Metagenome / Metatranscriptome	338	Y
F018198	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068482_12583772	F018198	GAGG	MTEKKNSATVRIYIDGKEMLYSHQNIIGAINAFLPYLTNDDLDELMLRFHTLKDHRRQKEYLAHLEAKVIPIQKNRHDT*
Ga0068482_12583773	F008155	AGAAG	MTPEHQQLATLVYIHAMKKQIEEEVKSKYLKRIEYLVNANNELMNELEQCESELVTVEKECYGRGA*
Ga0068482_12583774	F005400	GGA	MREQPQLGKNYKGFKDLTHTNMCYRCDYCDQGYQNIYWLQQIAIEYFICDRCQKYYRLTTKDMLELQYVENRQEWQDADCWPTNGFFPYPIGFDT*