Scaffold Ga0068482_1208103

Overview

Basic Information

• Taxon OID: 3300006338
• Scaffold ID: Ga0068482_1208103
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2096
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F012510	Metagenome	280	Y
F031252	Metagenome / Metatranscriptome	183	Y
F039345	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068482_12081031	F031252	AGGA	MKTFKGYLTEFAQLSTSDYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRATVFHTTDLRGLEN
Ga0068482_12081033	F012510	AGG	MKTFKSFYDWGKTFKEHLNEVYKDYPGKGWVHGTKDAPKINPKDIVWRSKVHHWDNTVRSDDTRMIITNTGKGKDKFQMWAVSDKSGDVVFHFGDKPTLDAAKEFASIRKWQEKK*
Ga0068482_12081034	F001930	GGAG	MKSFKGYITEEVAWLQSTSKMIFDFGQISSMKIPLTSKTMTWIFNVQLPRVTVFHVTNGIGLQNLIRLQNKKKSISAFFNMSADYIDSGIKTEGGVVAELDANILMSSKNDIMSMPDKAGRRWIELHSLDPDEKMHKELEQMVIDLAVKHDPRNKEYLKTSPEIGLGVWWKLQSDLLTKFDPAKAGKKMALIIADYMDGVNTILKKHKKDIQGAIHGYIVRRGTVAVKHPSGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTFNTARREADWVKTDIIPRLGKIPHKHWKSAAELSTYISQVADAEVRTFGGWARKK*
Ga0068482_12081035	F039345	AGGA	MKKIWNRFTAWLSGWPESKVKREREQIYLFEEEEQMIRKNNKNIGKKPKKKTEIMN*