Scaffold Ga0068482_1206067

Overview

Basic Information

• Taxon OID: 3300006338
• Scaffold ID: Ga0068482_1206067
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5512
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F034604	Metagenome	174	Y
F092216	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068482_12060676	F034604	N/A	MKIKEINIEGENIIIDFTGAPFWKYYVLQLYFLICYRKRLIDYIETT*
Ga0068482_12060678	F002348	GGAGG	MKIDYSIRSKDKWMMIGGWILSFLTIAAGASFVWPHIHSDLLGIVLIYIGVRIFNFSTFEEYKEKRVKLLLKFLK*
Ga0068482_12060679	F092216	N/A	MTKHYDRFDLEEEIMNVWQTEDDLDAVVHRIMEDLDPIPNKEIANLIISVSKIHDLRCQKLFDIFEKMVHDNCFISKGTSLDYRGVPLDDEKYDYPKSEDFCKLCVVN*