Basic Information | |
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Taxon OID | 3300006338 Open in IMG/M |
Scaffold ID | Ga0068482_1195761 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3073 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 770 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F032813 | Metagenome | 179 | N |
F040683 | Metagenome | 161 | Y |
F055789 | Metagenome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0068482_119576110 | F040683 | GAGG | MKKYRVWGYETQGYHIDLDANNKQDAHDKAMDIDREDWQIGNDGMNTCFDINKKNIERIDNE* |
Ga0068482_11957612 | F032813 | AGGAGG | MKTNEEGHVWLEKSQAYICPSYLNKTCTDFSDTNSESLYNLYQKHFPNAESNAIKSQIKDEIFNLIGKDNYKKKNLIKALRNKFPDIKSGVICRMIKKYLSLRVLEIDRTYKTKPFVIKGKYYIN* |
Ga0068482_11957616 | F055789 | N/A | MSDPYLEKIAQERHLHECENEIVDAKKEIFALKQEIINLKAEVKYERELRIHGADYHKPKDYHSRLRQMIEIVTKENKLTDIHDIVDEAQRRLVRE* |
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