Scaffold Ga0068502_1293616

Overview

Basic Information

• Taxon OID: 3300006336
• Scaffold ID: Ga0068502_1293616
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4323
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007052	Metagenome / Metatranscriptome	359	Y
F018265	Metagenome / Metatranscriptome	236	Y
F048371	Metagenome	148	Y
F097522	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068502_129361611	F097522	N/A	MKKLTKNDSSKRLAALVYDKALREQIEERVKSKYIKRIEYLVGANNELMKELEQYERVSMSEKI*
Ga0068502_129361615	F018265	GAG	MSMEVHTLRAVKITQNIFELRKVNREIEEVSKIMELLERRKTMLENSF*
Ga0068502_129361616	F048371	N/A	MDLRKVIGMTVFIFMLLSYLSFRAEWNLFMWIHMIQFFRYIDLPHDYWVFLDRYIFNGAL
Ga0068502_12936165	F007052	GAG	MKKNETYFVARLMKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRMTNVGDICVEIDKHFFGYEISSEELLKNSERVL*