Scaffold Ga0068502_1219395

Overview

Basic Information

• Taxon OID: 3300006336
• Scaffold ID: Ga0068502_1219395
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2223
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000747	Metagenome / Metatranscriptome	908	Y
F017655	Metagenome / Metatranscriptome	239	Y
F017843	Metagenome / Metatranscriptome	238	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068502_12193954	F017843	GAGG	MKKLLFALLLFPMSLFAADFDGIGVSVSGHNDQGTNFGISDSGSLSLGLAGEGYTFAFDQDGNDMAVSAYGVELSRSDSKKVGVGYGAGIGILDGGVHYNWMSSGDHVVGGGTTLTVGGFDLATAADWNLTASDITGTVGTSMDLWGAQASAVSKWDIDDFSYDGLELGAGYAIPVAAGIHITPSVGVDFDSDWSRGDATASVAVILSFGRSATP*
Ga0068502_12193955	F017655	AGAAG	MTNGNPFSKSLSLGHIIATVGIIIAGFTFIYDLREAIAILQYKGDTVEERLDRIVVRTDDQFEQIMDHLVRLEGKIDEMIIERTE*
Ga0068502_12193956	F000747	N/A	AAFMAAFLLPVQARMYPTSFEIKSICWSDISEALTYHQEILGEYPIGKGWIDNKQGPSFGAIMFNPNKPSWTFLSFHKNKDAVVVCAITVGSQWEIFSPGEDKIQL*