Scaffold Ga0068502

Basic Information
Taxon OID	3300006336 Open in IMG/M
Scaffold ID	Ga0068502_1209118 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006336 Open in IMG/M

Scaffold ID

Ga0068502_1209118 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4075
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4075

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (80.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F007052	Metagenome / Metatranscriptome	359	Y
F007771	Metagenome / Metatranscriptome	345	Y
F010791	Metagenome / Metatranscriptome	299	N
F012919	Metagenome	276	Y
F038414	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068502_12091181	F007052	GAG	MEKNETYFVARLIKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEFLRSTNVGDICVEIDKHFFGYEISSEELLKNSVRV*
Ga0068502_120911812	F000615	GAG	MCRIRCFYECSDGEMGFAEMVLSYEDDIAGFVKHWSTGGRMVITEHIDLV*
Ga0068502_120911813	F007771	GAGG	METIIHAKTIDKKVRLALYGMLHHSATKLFPKRMKYVSIKLHLKHYVYDGVAMIEEDTRITNPRNFKIVIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSEDEYYCSPHEVEAYGKEKWLQLGYTATWNKIEEEKENG*
Ga0068502_120911814	F010791	GAG	MSFEFRAGRKRVVKSVETVEEANELMRSMIAIRNENSLWENIDVKTGHLRAVDELEKLVGTIFDVFDTMSIYVNGKSVRRIWSRGF*
Ga0068502_12091182	F000615	GAG	MCRIRSFYECSDGTMGFAEHVMRYEDDIVGFIKHWKTGGRMVITEHIDLV*
Ga0068502_12091184	F012919	GGAG	MKISRKKLNLEIVKYLKNGGKITKLPDGPDYRFQPYGVRVTPGDPKVDLTISDTPTTKQQISYVEKNSL*
Ga0068502_12091185	F038414	AGAAG	MTREEQRDNTINELYKKRTSPKTIQIQDSKTSRSKAEWLHISTSDEDGEGQGTYNVGRRKFKRERLADEKLRAKQAKAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068502_1209118

Overview

Ecosystem & Geography

Associated Families

Sequences