Scaffold Ga0068502_1202371

Overview

Basic Information

• Taxon OID: 3300006336
• Scaffold ID: Ga0068502_1202371
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2029
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007055	Metagenome / Metatranscriptome	359	Y
F007771	Metagenome / Metatranscriptome	345	Y
F026028	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068502_12023711	F007055	N/A	MIWIAIIMTWNPVIYTIDKEFTSEVDCWNYYDNGVGESEMRSRYGTQVLDHQGNKPDKEYMKKHRPSHREYPTRLYKNFGGWMVWLTCDIKGRNEGL*
Ga0068502_12023713	F026028	GAG	MSVCSNCYHRIRHRNKIDVGHWWNNPPDHVYVCSDKCKEEIEKKVADGTWMIMRPFPKTEKEDDGLPTALTDKQFGVE*
Ga0068502_12023715	F007771	N/A	METIIHAKTIDKKVRLALYGMLHHSAIKLFPRRMKYVSIKLHLKHYVYDGVAMIEEDTKITNPRNFKIVIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSGEDYYFSPHEVEAYGLEKGLQLGYTATWNKIETEKENG*