Scaffold Ga0068502_1167166

Overview

Basic Information

• Taxon OID: 3300006336
• Scaffold ID: Ga0068502_1167166
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2866
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000423	Metagenome / Metatranscriptome	1156	Y
F003611	Metagenome	477	Y
F011673	Metagenome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068502_11671662	F003611	N/A	LKDEIMKELFWALYFALHFAGAFLGIVIAINLSTWLGLTMFAFFLVKFMLMLPEIKRI*
Ga0068502_11671665	F000423	GAGG	MKSLSKAIFYIKYYAKKHDCIIERKATLDENCFEGRHKKFGYPYKKYIDVWATEEINNGQPQYRTASKKWEINDEQTLSI*
Ga0068502_11671666	F011673	GGA	MTSKPSAFKILPIYLQPRILSAVSYIHQSPNKEIGLERINKVSRKLSDREMTYVMSLLVFDKIIDMVKDSDEFKHHTQSMKERTLQ*