Scaffold Ga0068502_1164906

Overview

Basic Information

• Taxon OID: 3300006336
• Scaffold ID: Ga0068502_1164906
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3026
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F006423	Metagenome	373	Y
F009367	Metagenome / Metatranscriptome	319	Y
F056076	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068502_11649064	F001930	AGGA	MKRFKQYLKEGVAWELSASKMIFDFQNVPDMKIPFTSKTMEWIFKVQMPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMTADYIDSGIKTEGGVVAELDANIIISSKNDIMSMPDKAGRRWIELHSLDPDEKMHKELEQMVIDLAVKHDPKNKEYLKTSPEIGLGVWWKLQTDFKDDGKKLSLIIADYIDGVATILKKHKNDIQGRVHGYIVRRGTIAVKHPSGRMVGGDSELPEWNAWDEQVVNEIKIEKVHTFNTARREADWVKTDIIPRLGRIPHKHWKSAAELSTYITQVADAEVRTFGGWARKK*
Ga0068502_11649065	F006423	AGG	MKTFKQHLDEKTEYYLDTSQDNTEKYVANDGDYWYTGKIGIRGGDRYLKFAATHGKNSYFERAKLKKTTPEKLEKDVGYTVDFKKLYKR*
Ga0068502_11649066	F009367	GAG	MSSEIHSTMVDVVRLTQENGSTMLCRGGEDAVKRFWEKWPIVKAEKTGEKQLLQWIYVDEVDQPYISSTHM*
Ga0068502_11649069	F056076	N/A	LGEDFVKVVDHSLTEDGVIEEYYVTHSGTLLTIQANEVTEEHGGSHSHEKKPKK*