NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068502_1150529

Scaffold Ga0068502_1150529


Overview

Basic Information
Taxon OID3300006336 Open in IMG/M
Scaffold IDGa0068502_1150529 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9910
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013700Metagenome269Y
F032813Metagenome179N
F058216Metagenome135Y
F061266Metagenome / Metatranscriptome132Y
F096041Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0068502_115052913F032813AGGAGGMKTNEEGHVWLEKSQAYVCPSYLNKTYTDFSDTNSEWLYNLYQKHFPNAKVNGIKSQIKDEIFNLIGKDNYKKKNLIKALRNKFPDIKSGVICRILKKYLSLRVLEIDRTYKTKPFVIKGKYCIN*
Ga0068502_115052917F061266AGGAGMFGTKAEEVKLKKFMVMCKSKRGSTYYHEKSFFTLADADAYANLIRRQEDESGNEFYLFEQSKHYGNGEDKK*
Ga0068502_115052923F013700GAGGMDFKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMASGDMVRGEFLRRIAQIGYDELKFQDIADTLEEDVDENNSRLHSKYYEPPEPNEDDE*
Ga0068502_115052924F096041AGGAGGMNKNKEYIYITRTMKINVPALLCQDAIDKVLTMKKNDLIPKELGFLYTRCRVRDRGKDKYGL*
Ga0068502_115052927F058216AGGAGGMNKTIGQLIKEDHWSTRRLAVSLNITKEDLKGVKWEKSNKPYKKSKKKSYLW*
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