Scaffold Ga0068502_1146308

Overview

Basic Information

• Taxon OID: 3300006336
• Scaffold ID: Ga0068502_1146308
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8832
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F007052	Metagenome / Metatranscriptome	359	Y
F018198	Metagenome	236	Y
F038414	Metagenome	166	Y
F097522	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068502_114630816	F007052	GAG	MEKNETYFVARLLKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSERVL*
Ga0068502_114630819	F038414	GAG	MTREEQRDYTINEFYKKRTSPKTLQIQASKTVRSKAEWLHISTSEEDGEGQGTYDVGRRAMKRERLADKKLRAKQAKAAELS*
Ga0068502_114630821	F002874	N/A	MKEKIDLSLNRSLSELESSYWEFVEATEGEDSSGWSKSVQEDLSALEGYLMKMEVL*
Ga0068502_114630824	F097522	N/A	MKKLTKNDSSKRLAALVYDKALREQIEERVKSKYIKRIEYLVGANNELMKVLEQYEKVSMSEKI*
Ga0068502_11463089	F018198	GGA	MAEENKVQIFINEKEILYSHQNIVAAINSFLPYLTNDDLDEMMKTFSTLKEHRRQKEYLALLEAREKSIQKNRHDT*