Scaffold Ga0068502_1142768

Overview

Basic Information

• Taxon OID: 3300006336
• Scaffold ID: Ga0068502_1142768
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2829
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051977	Metagenome / Metatranscriptome	143	Y
F077398	Metagenome / Metatranscriptome	117	N
F105353	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068502_11427684	F105353	N/A	VAKDRCDCGSKRYGYEDGLHEVWLCYKCGKFIGTAGGDAFFSTLAKKQPEVILTMIQEKILTPITANKHGINRRNKTFGR*
Ga0068502_11427685	F051977	N/A	MEAFINKVCADFVMGTSIYVYETEEEYRKIYHRIDKEVMHSAPILDIFMKEDKKLWVVTKITKNKERPQLGRSIVHFVNGTVFEYSDGKERPILKNSVVFNSKKGRVEFFPKKLRDPELWIKVDRFYGMPPNKNVVLDQSKRFYDISRDRLNFIVKNKDGL*
Ga0068502_11427688	F001235	GAG	MGTELNVDPGSDIGKKLWEIHQKDEYTHVTNYKEAICINCFKKDAASATIADICSECAGKRGREPLLATICQKMYGLCFFCGKYKFEIEQINARFCRSCHRRIANVTKEYNKKGGPMGMDPFWLAMRKKHGKDWKIIMSNNLGNKR*
Ga0068502_11427689	F077398	AGGAGG	MTVKKKIEAQHKKKPVVEIVKATVQVKDKKVDVYTKAYNDTIKRAGSVYTASYTLIDETIDDIKKMSRKVSTGDYSANNVYLILQDALKKIRLAEK*