Scaffold Ga0068480_1498494

Overview

Basic Information

• Taxon OID: 3300006335
• Scaffold ID: Ga0068480_1498494
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1765
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F006551	Metagenome / Metatranscriptome	370	Y
F066853	Metagenome	126	Y
F089050	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068480_14984941	F089050	AGG	MVELNHNVVSFNSDTLIKGSHGVLVNVYVSKVGSGSNKVQF
Ga0068480_14984942	F001625	N/A	MALTISTADWTSANVRKTLSVQAALVSKLRIYSIKVTFGASDTYATNGVSADLKEGRISTLVAVTPTYTDSKLVVQYDKTNEKIKAFTGSGNGNILAEVPNSSALVNSKVFEFLVIGY*
Ga0068480_14984944	F066853	N/A	MATITSKRGTSTTTDDGVVFGKKSSVLPENESITVNRGTKVVKTKDIPTDKKVSLKGQTVTVKRGTEVITL*
Ga0068480_14984945	F006551	N/A	FLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDASEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL*