Scaffold Ga0068480_1248950

Overview

Basic Information

• Taxon OID: 3300006335
• Scaffold ID: Ga0068480_1248950
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7301
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006868	Metagenome	363	Y
F012072	Metagenome / Metatranscriptome	284	Y
F016055	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068480_12489502	F012072	AGAAG	MIMTLMMIWNMKKYHIKIKNKVVHRTDDMKKALQVVSQIFRKGHEDVSLHGGRIGKWR*
Ga0068480_12489503	F016055	AGG	MEEEFHTEKRGSLRKSKRLVNKRERLQIKKYLKGNSPEDFIDDNDIDDDMEYEEIPYKN*
Ga0068480_12489506	F006868	AGGA	MTNYDMDEIERLREREKRSRGIKPNWPQSVEIGKDETPHTAVNIELSDDDFRRVAFQAHERDITFNKMVGLILKDGLDKSEYRFEHDNKPQLLNEDGHPFSNEDK*