Scaffold Ga0068480_1207000

Overview

Basic Information

• Taxon OID: 3300006335
• Scaffold ID: Ga0068480_1207000
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2440
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005103	Metagenome / Metatranscriptome	412	Y
F008914	Metagenome	326	Y
F099863	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068480_12070003	F005103	N/A	MEDNNIQIFINKKEMPYSHQNMIRAINSFFPYLTNDDLNELSEYISTLKDHREKKEAESRLEVEKHSWPYPDTKKQI*
Ga0068480_12070004	F099863	N/A	LKKDKEELKVIKKKERIFDFFWTLEEQHTILGLLRGRKMKKELKEHLKEKEVKNGR*
Ga0068480_12070005	F008914	AGGAG	MTEREVAIEKCRTWVRGWDAEQREMVLWILEEEVRHDKLMDFVHEDGSKTKPEKLN*