Scaffold Ga0068480_1114611

Overview

Basic Information

• Taxon OID: 3300006335
• Scaffold ID: Ga0068480_1114611
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4076
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017655	Metagenome / Metatranscriptome	239	Y
F017843	Metagenome / Metatranscriptome	238	N
F082821	Metagenome	113	Y
F101331	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068480_11146111	F082821	N/A	HEDFLGEYPVGKGWVSDTSFGAIMYNPTKPSWTFLSFHQHEEGVIVCAITGGTQWDILTPGEDEIQI*
Ga0068480_111461111	F101331	N/A	VDHTGTADNEQEKEKELVVVTWVDILQTADWTPAEDVTIPTMQSVGWFISRDEREIKIGSTRVVQSADDPQGTPFSITAFPIGCVEEIKSV*
Ga0068480_11146112	F017655	GAG	MTNGNPFSKGVSLGHIIATVGIVIAGFTFIYDLREAIAILQYKGDTVEQRLERIQQRTDNQFDQIMDHLERLESKIDEMIIERNE*
Ga0068480_11146113	F017843	GAGG	MKKLLCALMMLPMSLFAADFDRIGVDVSGFNSDGVRFGIANNGSASLGIAGDGYTFTFDQDDNDMAVSAYGVELSRSDSKKVGVGYGAGIGIFDGGVHYNWMSSGDHVVGGGTTLTVGGFDLATAADWNLTASDITGTVGTSMDLWGAQASAVSKWDIDDFSYDGLELDAGYAIPVAAGIHITPSVGVDFGSDWSRGDATASVAVILSFGRSAAP*