Scaffold Ga0068480_1108015

Overview

Basic Information

• Taxon OID: 3300006335
• Scaffold ID: Ga0068480_1108015
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3326
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026709	Metagenome	197	N
F043453	Metagenome	156	N
F084345	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068480_11080155	F043453	AGGAGG	MSEQIKLVVDRKNKHGTDFYYPVCELSQTLVKLKGNTKKVLTKSDMFLLSKQFDINLKEQKNIWKEDE*KEVGGV*
Ga0068480_11080157	F084345	AGGAGG	MKVRFIDHVNHIRYKDVEVKSMKQAEEMFEDGSIYDDYDKWEYGKEYGESYVEEIK*Q*
Ga0068480_11080159	F026709	N/A	LDNMYIILIKDNHRFRIYTNEIFSLYKDALDYAQRSKFKKNVNWKIEEFDYKYFKR*