Scaffold Ga0099675_1343035

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1343035
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4203
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F001504	Metagenome / Metatranscriptome	681	Y
F007173	Metagenome / Metatranscriptome	356	Y
F020546	Metagenome / Metatranscriptome	223	Y
F028529	Metagenome / Metatranscriptome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_134303511	F028529	GGGGG	MRLSKYLTENLDTKTVNLTLTFDERSELLKHLEMFDEHIDQLHPLVESVQDKLLGID*
Ga0099675_134303513	F007173	N/A	MQTTTTKAIISRDKLMEYIYEDNRDLLMGLQDDLSDMLSATGKFSITLDEIVQNYMPFIPLHIIENEDEIKKAFPDRVTDDEYIFIYDRDMTPNEITLNVEWRD*
Ga0099675_134303514	F001504	GGAG	MTQDTEHFYAVQSFLEDDELHKIWNIIEIAMEREGYDVSNAELSMRLYDPELTENKGYYNQPEPINYYQGA*
Ga0099675_13430354	F020546	GGAGG	MTTKTDPNQNYTINEFYIKVKGDYGKEKTVRVNDMGDKLLQLITDLGWEYQRMGRSGRQVFDEIHQLLGTIPEGEVYMEI*
Ga0099675_13430356	F001479	AGGAG	MSKEMLFLCDVYDNWLDKNNLPHRSADDILYGENACKLTGNQSYWLESFISTWDVIVENT