Scaffold Ga0099675_1323044

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1323044
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1450
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006348	Metagenome / Metatranscriptome	375	Y
F008624	Metagenome / Metatranscriptome	330	Y
F008889	Metagenome / Metatranscriptome	326	Y
F023878	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_13230441	F008624	N/A	YHHLIMNPQAHRSTEELKTIVKALSKLRLLNTPEEDQRLFECEQELRKRKREDDFINAHFQVITY*
Ga0099675_13230443	F023878	GAGG	MTGIELFILIGGCYALYTVGMAIATELDYREVNKK*
Ga0099675_13230446	F008889	AGGAG	MYTTEQFEKDVQGLRDLIKMCDDLEKEENEKADRLIKQINGENAYYWRAY*
Ga0099675_13230447	F006348	GGAGG	MNKFYIVEDIRFDPKFKTEEEIKELEWKQYNGLGVWSSEGRTEDERINNLWEKVQDYMGVYLTSLE