Scaffold Ga0099675_1290554

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1290554
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2869
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F003869	Metagenome / Metatranscriptome	464	Y
F030123	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_12905541	F030123	AGGAGG	MSAISTDGMDKWLDDAYPDLDRRKANMIYEIASLIKDDPDSAPVLIEELVDIMFDEQIDHLEDVIVNHFGVEVYPE*
Ga0099675_12905543	F003869	AGGA	MAKRQYNRTHFYSIGSMLTDEEVHQVWEIVGNALDRNGFKDADGELSIRVYDETLKKNVINVIDKSLEVN*
Ga0099675_12905545	F001479	AGGAG	MSKEMLFLCDVYDAWLSKNKLPHRCASEILYGADTMNKLTANQSYWLESFISTWDVIAENT*