Scaffold Ga0099675_1215824

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1215824
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6648
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F001479	Metagenome / Metatranscriptome	687	Y
F014025	Metagenome / Metatranscriptome	266	Y
F029129	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_121582411	F001026	AGGAGG	MALHKLVLDDMELTALITHLEGQSEMMVESRLNCSNPSELPDREEVLLNLVYAKAFTIGWEADKNPKVDFNLIQNQDRIYKYK*
Ga0099675_12158242	F001479	AGGAG	MSKEMLFLCDVYDAWLIKNKLPHRSACDILYGENACKLTPNQAYWLESFIATWEVIAEHT
Ga0099675_12158244	F029129	GGAGG	MTTRTEPLAPHRTFIIEVRGEKLKVNKDGDKLHSLIDDLGWEYQRMGRSGRETYDEICHLLNMIPEDEVYMEI*
Ga0099675_12158249	F014025	GGA	MKLDNYELSTLHYTVSYYIDNANLDEDENEWLNLLKEKVDSIMVSQAKYDMECG*