Basic Information | |
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Taxon OID | 3300006334 Open in IMG/M |
Scaffold ID | Ga0099675_1122221 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2305 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 25 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002490 | Metagenome / Metatranscriptome | 554 | Y |
F013776 | Metagenome / Metatranscriptome | 268 | Y |
F025306 | Metagenome / Metatranscriptome | 202 | N |
Protein ID | Family | RBS | Sequence |
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Ga0099675_11222212 | F002490 | AGGAGG | MEMKEVKSLIREYVQDHYKYYGFYPYDVEVGDVLYTYEQYMDILSMTV* |
Ga0099675_11222216 | F025306 | AGGAGG | MTKAIKFTEAELETIERAMDDYMCYHDPATPASDLIGGLPVDERVNDIMVKITEAYANL* |
Ga0099675_11222217 | F013776 | N/A | MKEFSFEVTKTGWIHVEADSVEDAEARLQENFGHYYVITENGEELSNGWETTGEVELDPECAFNDYEEDF* |
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