Scaffold Ga0099675_1111989

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1111989
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2656
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F004869	Metagenome / Metatranscriptome	420	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_11119891	F004869	AGGAG	MSYDTEHYYAVQTFLEDDELIKIWNIIEIAMNREGYDVSNAELSMRLYDSELEENIEHDMENLLGSLSEGKDVDYGSKVDALVDSMNVTDEKVSPIHRRKDLDLL*
Ga0099675_11119899	F001504	N/A	MIYDSEYYYAVQTFLEDDELCKIFNIIEIAMNRAGYDISNSELSMRLYDNELEDNIEYDMEHLL*SLT*