Scaffold Ga0099675_1053705

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1053705
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1566
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005670	Metagenome / Metatranscriptome	393	Y
F018197	Metagenome	236	Y
F105361	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_10537053	F005670	N/A	MKLLTRREYNLILRALDSYDVFMNKKEKELRDDLEDKLYYNLYNPKDGVAQTNVDLSALYDIKTEKDLSY*
Ga0099675_10537054	F018197	N/A	MNTQLPEETNIKEWTNMPPISDELYQELVKEFNNERHYFFNDSYTLED*
Ga0099675_10537055	F105361	GAGG	MNKRATENNLNKEEFEQLKEAYVSTIVDSMSQKDLVDYVKTDYYNSLDKYNEFDLFEDIKYTLDEDFLDEMLSTITENRKG*