Scaffold Ga0099675_1033128

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1033128
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2595
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009691	Metagenome / Metatranscriptome	314	Y
F013094	Metagenome / Metatranscriptome	274	Y
F018383	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_10331286	F018383	GGAG	MEKITFNNEQLEFLKFIVQDFEYNDDHERYMIEQIENKIYQAQENQMLKVIGGMT*
Ga0099675_10331287	F013094	GAGG	MITAFFTGVIVAIPTSLVAMKLLNSSLFIDNQELRHINEKVSILINQLDDYREERLSDKFSIEKGNIKLETTD*
Ga0099675_10331288	F009691	GGAG	MRTTLNSKEYVTFARRFVKETVETMDIDEIRNIVTDYIHDEIQEKEDTFGQEGAFEEMMAWSEDVFLSVAEDFDLEFEGA*