Scaffold Ga0099675_1031065

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1031065
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2793
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F007756	Metagenome / Metatranscriptome	345	Y
F012583	Metagenome / Metatranscriptome	279	Y
F023620	Metagenome / Metatranscriptome	209	Y
F061924	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_103106510	F001026	AGGAG	MKHTIELDDMELTALITHLEGQNEIMCESRLNCSNPSETPDREEVLLNRVYEKAFTMGWDKHINPKVDFNLIKNQDRIYKYK*
Ga0099675_103106512	F061924	GGAG	MNFNIKLSDTEITSLVNFIEHWNVVARSLQDDEQEDQNLLDNIARKLDQTIINHREKVIKAQSKRPKEEW*
Ga0099675_10310653	F007756	GGAGG	MTKLNTLKRFYVTTKFEKYGTYTIQATSKEHAIQMWKDGDWNFDDYESDYGEYNEVIDDVEEEVFADTQLSLEGVLA*
Ga0099675_10310654	F023620	GGAGG	MKTALFLSEYDLSTVHYLCTYYKDNANLDAQDVDYINELQNRVNSLMEVTK*
Ga0099675_10310655	F012583	GGAGG	MNLSDQVKIKVFDKYIMRGGDQSLQNIEDICDFGFNMCQLGYDTETFNDVVIDVICKLTEKLEANS*