Scaffold Ga0099675_1028733

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1028733
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8419
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (67.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000802	Metagenome / Metatranscriptome	885	Y
F003869	Metagenome / Metatranscriptome	464	Y
F005533	Metagenome / Metatranscriptome	397	Y
F006662	Metagenome / Metatranscriptome	367	Y
F028529	Metagenome / Metatranscriptome	191	N
F062839	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_102873311	F028529	GGAGG	MRLSKFLTENIETKTVNLTLTFDERSELLRHLEMFDENIDQLHPLVESVQDKLLGID*
Ga0099675_102873312	F005533	AGG	MEYTHNELQLLDLISNINKQFYYIGQEDDKVAPIDVKKFTEYCVGFIDSLEIEQ*
Ga0099675_102873316	F003869	GGAG	MAKRQYKRTHFYSIAGMLTDEEVHKVWEIVGNALDRNGFIDADGELSIRVYDETLTKNVKITPKV*
Ga0099675_102873325	F000802	N/A	MTIEEYKDLLLEDELKIGYDVEDDDLPEEIEESSYVDELLTDGFHAVYDPLDELFGEPIAGYSL*
Ga0099675_10287333	F062839	GAGG	MKLKNILYRNFDSLTNDEKKFYDDNQEKYNLGICDKYNTVETRLIYIEYDFEFLSDNGIKECEKNNYTALSEEAFEELMTL*
Ga0099675_10287338	F006662	AGGAGG	MRTLTTKEYELISQIYNSTDETEANVAFEFQIQNDLYYQLFHSYEETKK*