Scaffold Ga0099675_1026552

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1026552
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6872
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F011410	Metagenome	291	Y
F047731	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_102655214	F047731	AGGAG	VTYTDKDPVEITLGICERCENYVPFVRLVVPEDKRVYQCMTCKAKHTQHINGKVTFNYVDEVYKLKRN*
Ga0099675_10265527	F000720	AGGAG	MTLIKENKGVRKKIPDRMMSATFTLPIDGRKVVGILDYTASDTGLTPMAFWVKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNVIGQMSNYLHKNMEDIIMGKQPDKKQRELSTDPYAMKE*
Ga0099675_10265528	F011410	AGGAGG	MKDFNLKVSWSISNTLVWTILAMGMGLMIVNIVTMINMYSVIETMWLEIQQVKETNMSLYQFIQEHRDDFN*