Scaffold Ga0099675_1025885

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1025885
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5948
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004869	Metagenome / Metatranscriptome	420	Y
F013094	Metagenome / Metatranscriptome	274	Y
F029784	Metagenome / Metatranscriptome	187	N
F037261	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_10258851	F037261	AGG	MATKTMKKWILTDTFDFHSKEAHYWQFDDFMEAKRTGESLVNSIGVNYLWKSTKGNPIKWIKFG*
Ga0099675_102588514	F013094	GGA	MISAFFTGVVVAIPTSLVMMKLLNSSLFINNSELTDMNQKISVIITQLDDYREEREKLFNVSNDTK*
Ga0099675_102588519	F029784	AGGAG	MCSQIYSHPVEGYKCFANANKSQGTYYTCCDLDTREIRYVTYIYDGYFMGYYLVQSAIKVAENFANCQEKIFLSSASNKWPYYKGNDNEYTIDRQYPMQYQIPSLDEVEYSYLDSLLTAGTSK*
Ga0099675_102588521	F004869	AGGGGG	MSYDTEHYYALHTFLEDDELHEIWNIVEKAMNREGYDVSNSELSMRLYDSELEENIEHDMENLLGSLSEGKDYDSMGVTENKVAQGHVRKDLDTL*