Scaffold Ga0099675_1024316

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1024316
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5564
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F004869	Metagenome / Metatranscriptome	420	Y
F029784	Metagenome / Metatranscriptome	187	N
F054943	Metagenome / Metatranscriptome	139	Y
F056679	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_102431610	F054943	AGCAGG	MRHLIPLTKNQLQIVQASLQLSLKYADSQYIDNVDEIMQVIEDNTRFGGNL*
Ga0099675_102431611	F029784	AGGAG	MCSQIYAHPVEGYKCFANANKSQGTYYTCCDLDTREIRYVTYIYDGYFMGYYLVQSATKVTENFANSQEKIFLSSASNKWPYYKGNDDEYTIDRQYPMQYDIPSLDEVEYSYLDSLLTAGTSK*
Ga0099675_102431613	F004869	GGAG	MSYDTEHYYALHTFLEDDELHEIWNIVEKAMNREGYDVSNSELSMRLYDSELEENIEHDMENLLSSLSEGKDQPVEKAAQGHVRKDLDTL*
Ga0099675_10243162	F001504	GGAG	MSYDTEHYYAVQTFLEDDELYKIWNIIEIAMNREGYDVENAELSMRLYDSELTENIESDMEHLL*
Ga0099675_10243168	F056679	N/A	MKLVTHIDVHEKLDEDISFQINNALGLWSSKNDADLWEDVRKYMFPYTLKSVEFEKNRPHSLTSYK*