Scaffold Ga0099675

Basic Information
Taxon OID	3300006334 Open in IMG/M
Scaffold ID	Ga0099675_1024313 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006334 Open in IMG/M

Scaffold ID

Ga0099675_1024313 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7746
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (92.59%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7746

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (92.59%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	25
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F007173	Metagenome / Metatranscriptome	356	Y
F013094	Metagenome / Metatranscriptome	274	Y
F014025	Metagenome / Metatranscriptome	266	Y
F023620	Metagenome / Metatranscriptome	209	Y
F082798	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_102431313	F013094	AGGA	MISAFFTGVVVAIPTSLVMMKLLNSSLFINNSELLDMNQKISVIITQLDDFREERREEREKFLNVSEDTK*
Ga0099675_102431314	F001026	AGGAG	MTHTLKLNDLELTALITHLEGESEHMCESRLNCSNPSETPDIKEVLLNRVYEKAFTIGWDKHINPKVNFDLIKNQDRIYNYK*
Ga0099675_102431317	F007173	AGGAG	MQTITKAKISRESLMEYIHEDRDLLMGLQDDLSDMLFATGKYTITLDEIVQNYMPYIPVYLIENENEIKEAYSDRIDEDDNLFIFDRDRTPNEITLNVEWID*
Ga0099675_102431324	F014025	GGA	MNQLDNYELSTIHYTISYYIDNANLEEDENEWLNLLKEKVDSIMVSQAKYDMECG*
Ga0099675_102431326	F001026	AGGAGG	MAKHTLELDDLELTALITHLEGQSEMMVESRLNCSNPSELPDREEVLLNLVYAKAFTIGWDADKDPNNDFDLIKNQDRIYQNKLYPQVYGQTK*
Ga0099675_10243134	F082798	N/A	MSELSALKQAQYHLKQLEGHIKDNKWYSHLYSHLAAVEGELQRQVETLEETKVKIIDNSPAGEIPETDRLYDVLELSTNGFFPPDNSYTSLSRVGASQKYEILLSEGLSPENIKIVRVK*
Ga0099675_10243137	F023620	GGA	MKTALFLSNYDLSTVHYLCSYYIDNANLDRQDVDYITELQNRVENLMEVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099675_1024313

Overview

Ecosystem & Geography

Associated Families

Sequences