Basic Information | |
---|---|
Taxon OID | 3300006334 Open in IMG/M |
Scaffold ID | Ga0099675_1024313 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7746 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (92.59%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 6 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 25 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001026 | Metagenome / Metatranscriptome | 802 | Y |
F007173 | Metagenome / Metatranscriptome | 356 | Y |
F013094 | Metagenome / Metatranscriptome | 274 | Y |
F014025 | Metagenome / Metatranscriptome | 266 | Y |
F023620 | Metagenome / Metatranscriptome | 209 | Y |
F082798 | Metagenome | 113 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0099675_102431313 | F013094 | AGGA | MISAFFTGVVVAIPTSLVMMKLLNSSLFINNSELLDMNQKISVIITQLDDFREERREEREKFLNVSEDTK* |
Ga0099675_102431314 | F001026 | AGGAG | MTHTLKLNDLELTALITHLEGESEHMCESRLNCSNPSETPDIKEVLLNRVYEKAFTIGWDKHINPKVNFDLIKNQDRIYNYK* |
Ga0099675_102431317 | F007173 | AGGAG | MQTITKAKISRESLMEYIHEDRDLLMGLQDDLSDMLFATGKYTITLDEIVQNYMPYIPVYLIENENEIKEAYSDRIDEDDNLFIFDRDRTPNEITLNVEWID* |
Ga0099675_102431324 | F014025 | GGA | MNQLDNYELSTIHYTISYYIDNANLEEDENEWLNLLKEKVDSIMVSQAKYDMECG* |
Ga0099675_102431326 | F001026 | AGGAGG | MAKHTLELDDLELTALITHLEGQSEMMVESRLNCSNPSELPDREEVLLNLVYAKAFTIGWDADKDPNNDFDLIKNQDRIYQNKLYPQVYGQTK* |
Ga0099675_10243134 | F082798 | N/A | MSELSALKQAQYHLKQLEGHIKDNKWYSHLYSHLAAVEGELQRQVETLEETKVKIIDNSPAGEIPETDRLYDVLELSTNGFFPPDNSYTSLSRVGASQKYEILLSEGLSPENIKIVRVK* |
Ga0099675_10243137 | F023620 | GGA | MKTALFLSNYDLSTVHYLCSYYIDNANLDRQDVDYITELQNRVENLMEVK* |
⦗Top⦘ |