Scaffold Ga0099675_1021337

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1021337
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13401
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000802	Metagenome / Metatranscriptome	885	Y
F003333	Metagenome / Metatranscriptome	493	Y
F018383	Metagenome / Metatranscriptome	235	Y
F034213	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_102133722	F000802	N/A	MTIDEYKDLLLEDEINIGYDVEEDDLPDQYDDESYIDGLLTTGFHEVDASEMFGEEVVGYSLY*
Ga0099675_102133729	F034213	AGGTGG	MGVQQKIQNLKNFASLDKPFKEWLTTCPREYIWQIDDVTKNHEGTFTFRRTNGCQV*
Ga0099675_102133737	F018383	GAGG	MEKITFNNEQLEFLKFIVQDFEYNDDHEKYMIEQIENKIYQAQENQALKLLSGMN*
Ga0099675_10213376	F003333	AGGA	MGSNRTLCIQSMGKPQKEKKVGDRYNVLRKGKVIFWNVSESELFDIMEDLAVECYYNQTLTSKDITYEPYIEEPLNNG*