Basic Information | |
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Taxon OID | 3300006334 Open in IMG/M |
Scaffold ID | Ga0099675_1021337 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13401 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 25 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000802 | Metagenome / Metatranscriptome | 885 | Y |
F003333 | Metagenome / Metatranscriptome | 493 | Y |
F018383 | Metagenome / Metatranscriptome | 235 | Y |
F034213 | Metagenome / Metatranscriptome | 175 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0099675_102133722 | F000802 | N/A | MTIDEYKDLLLEDEINIGYDVEEDDLPDQYDDESYIDGLLTTGFHEVDASEMFGEEVVGYSLY* |
Ga0099675_102133729 | F034213 | AGGTGG | MGVQQKIQNLKNFASLDKPFKEWLTTCPREYIWQIDDVTKNHEGTFTFRRTNGCQV* |
Ga0099675_102133737 | F018383 | GAGG | MEKITFNNEQLEFLKFIVQDFEYNDDHEKYMIEQIENKIYQAQENQALKLLSGMN* |
Ga0099675_10213376 | F003333 | AGGA | MGSNRTLCIQSMGKPQKEKKVGDRYNVLRKGKVIFWNVSESELFDIMEDLAVECYYNQTLTSKDITYEPYIEEPLNNG* |
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