Scaffold Ga0099675_1021330

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1021330
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9264
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002137	Metagenome / Metatranscriptome	590	Y
F009691	Metagenome / Metatranscriptome	314	Y
F020546	Metagenome / Metatranscriptome	223	Y
F023367	Metagenome / Metatranscriptome	210	N
F058219	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_102133016	F020546	GGAGG	MTTKTDPNKDFTIKEFYIKVKGDYGKEKNVRVNDMGDKLLTLITDLGWEYQRMSRSGKEVFDEIHQLLGTIKEDEVYMEI*
Ga0099675_102133017	F058219	AGGAG	MSKSKKQLKKDLKYLKKHLDDNKEINQIIEHTKKIGISSAQYFCEEFVFIPDGETPEETARFHDVEYLDITEFNYHHWISNKMEDY*
Ga0099675_102133024	F002137	AGGAG	MKVSELIKALSYYNDDDNITFYFLKNDTLTNCQVEDISFYTESMGVEFTIQDTSEVMEEVDV*
Ga0099675_10213307	F009691	AGGAGG	MTSTLNSNDYVTFARRFVKETVDTMDIKELKSIVSDHIHEEIQEGENEYGQSGAFDEMIAWNEDVFLSVAEDFDLEFEGV*
Ga0099675_10213308	F023367	GGAGG	MTKKGSKKFVFTEKFISYADVEIYAENEEHARLQFQNGNYQYYDISDFTDGHELIEVKEVELDD*