Scaffold Ga0068500_1228121

Overview

Basic Information

• Taxon OID: 3300006332
• Scaffold ID: Ga0068500_1228121
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2121
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017554	Metagenome / Metatranscriptome	240	Y
F047111	Metagenome / Metatranscriptome	150	Y
F049032	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068500_12281213	F047111	GAGG	MQLTARSIVLDYYPIQDYRSVIFPNKFLRILSFKGATMNKRIVNEDKMNEEILDRVTNYNYNVTDNLLNLPQFHTNLGGAL*
Ga0068500_12281216	F017554	N/A	MNTTILYSFPDDLKYRYMSFDTYQKALKCIELFKQIEVKAEVKV*
Ga0068500_12281218	F049032	AGGGGG	MINTNNYSQNRGSEVINQLTDYSYNVNMYEEILHYYLTEKYTVFPQNIHNSCGKSIFNSGKKVN*